Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015913329.1_cds_XP_016463369.1_56499
CDS Infomation

[gene=LOC107786416] [db_xref=GeneID:107786416] [protein=polygalacturonase QRT2-like] [protein_id=XP_016463369.1] [location=join(18108..18137,18353..18487,18606..18743,19550..19743,19848..19935,20252..20278,20459..20666,20750..20831,21721..21829,22156..22272,22458..22697)] [gbkey=CDS]
Sequence

ATGTGTTCCTCTAACTCTTCATATACCATGAAAACTTTGGTTATCTTGTTCATTCTTGGC
TTGAGAAATTCAGGAATATCCTATGCAAGTATAATTGGATATGCAGGAAGTTTTAATGTC
TTGGATTATGGAGCTGCTGCTGATGGTATTACAGATGATTCTCAAGCATTTCTTAATGCT
TGGAATGATGCATGTTCATCAGCTGGTGGATCTCCTGAAGTGATTATTCCTCCAAATATG
ATATTTTTACTTAGTCCTCTCACATTCAGAGGTCCCTGCAATTCTGAAAACATCTATTTT
GTGATATCAGGTAGACTCGTTGCACCAAGCTCACCTGCTATATGGACCGGGGAGGATGCG
AGTCAGTGGCTGGCTTTCAGAAATGTTAGCGGTCTAATAGTCGATGGCTCAGGAACCATT
GATGGGCAGGGACAAGGATGGTGGGATCAATCATGTAGATACCACCCTGACATGGTATGT
CACAAGATACCAGATAATTCTAATTCCACCGTTACTATTAGTAATGGTCCGAGGGTCTGC
CGAAAACAACCTCTCTTACTTTCTCCAGGTAGGAGTAAGAACTGCGAAGGATGCACAAGA
TTAGCTCCTACTGCCTTGAAGTTCATTTTTTGCAGTCAGAGTTCCATCAGTAACATTTAC
TTTGGCAACAGTGCTCAAACTCATATACTTATAGAGAGATGCAATGGATTCAAAGTGGAT
AGTGTATTGATTGAATCTCCAGGAAATAGTCCAAATACTGATGGAATTCACATTCAGTCT
TCTCAATATGTGGCCATTACCAATTCTAAAATCAGCACTGGGGATGATTGTATTTCAATT
GGAGATTACTCTTCTAATGTACAAATATACAACATTCAATGTGGACCAGGTCATGGTATA
AGTATTGGAAGCTTAGGGAAAGGTGGTAATTTTGCTCAAGTTGAAAACATTCATGTGAGC
AATGCTTTCTTCTATGGAACTACAAATGGAGCTCGTATCAAGACATGGCAGGTTGGCAGA
GGATATGTACGAGATGTCATATTTGAGAATCTTGAATTTAACTCAGTCAAGAATCCCATT
ATAATTGACCAGAATTACTGCGACGTTCGAGGAGCTTGTAAGGAAATGGTAACTGGAGTG
CAAATTAGCAATGTTATTTACCAGAATATATTTGGAACATCGAGCACAGATATCGCAATA
AATTTGAACTGCAGTATGTCAGTGCCATGTACTGATATAACAATGCAACTAATACAACTA
ACATCAGCGACACCAGGAACAACGACACAAGGAAGGGAAGTCACTGCTTATTGTAGGAAT
GCATATGGCCAAGAATATAGTATTGAACCTGGTCCTTGTATCTCATAA

Peptide Sequence

PEP ID

XP_016463369.1
PEP Infomation

PREDICTED: polygalacturonase QRT2-like [Nicotiana tabacum]
Sequence

MCSSNSSYTMKTLVILFILGLRNSGISYASIIGYAGSFNVLDYGAAADGITDDSQAFLNA
WNDACSSAGGSPEVIIPPNMIFLLSPLTFRGPCNSENIYFVISGRLVAPSSPAIWTGEDA
SQWLAFRNVSGLIVDGSGTIDGQGQGWWDQSCRYHPDMVCHKIPDNSNSTVTISNGPRVC
RKQPLLLSPGRSKNCEGCTRLAPTALKFIFCSQSSISNIYFGNSAQTHILIERCNGFKVD
SVLIESPGNSPNTDGIHIQSSQYVAITNSKISTGDDCISIGDYSSNVQIYNIQCGPGHGI
SIGSLGKGGNFAQVENIHVSNAFFYGTTNGARIKTWQVGRGYVRDVIFENLEFNSVKNPI
IIDQNYCDVRGACKEMVTGVQISNVIYQNIFGTSSTDIAINLNCSMSVPCTDITMQLIQL
TSATPGTTTQGREVTAYCRNAYGQEYSIEPGPCIS

Transcript Sequence

Gene sequence data has not been registered.